DS HDD IDE games files directory Issue

[Elgor4uk]

I used RD v3.3 and often launched DS through it (Start-Launch DS). I also added RD v3.3 + new version of DS 4.0.1 Release to the build. And I did not find such a problem. All game files are in place in the original version without extraneous files and folders. Perhaps the problem is not in RD?